A Shortcut to Structure in AlphaFold 3
Under consideration · Nature Methods
research & writing
Publications
Peer-reviewed articles, conference papers, preprints, and selected writing. Each entry links to the journal, publisher, or manuscript host.
AI for Science
A General Framework for Injecting Biophysical Priors into Protein Embeddings
Presented at MLSB
Under review · PLOS Computational Biology
Adversarial Sequence Mutations in AlphaFold and ESMFold Reveal Nonphysical Structural Invariance, Confidence Failures, and Concerns for Protein Design
Published · CSBJ
AlphaInterp: Probing AlphaFold 3's Internal Representations Reveals Evolutionary Determinants of Predicted Structure and Confidence
Accepted · PLOS Computational Biology
AF3Complex Yields Improved Structural Predictions of Protein Complexes
Published · Bioinformatics
Combining Structural Modeling and Deep Learning to Calculate the E. coli Protein Interactome and Functional Networks
Published · Nature Communications
Biosecurity
AI biosecurity must include agriculture
Published · Science
Know Your Scientist: KYC as Biosecurity Infrastructure
Published · Frontiers in Microbiology
Restricted Release of Advanced Biological Models Safeguards Biosecurity
Published · NeurIPS workshop
Best Paper Award · Oral
Resilient Biosecurity in the Era of AI-Enabled Bioweapons
Preprint · arXiv
Agricultural Biosecurity in the Age of Biological AI
Working paper · SSRN
AI & Social Media
When More Shots Don’t Help: LLM Sensitivity and Variability in Social Media Annotation and Stance Detection of Health Information
Published · Computational Communication Research
A Novel Multimodal Deep Learning-Based Approach to the Recognition and Analysis of Pro-Eating Disorder Content on Social Media
Published · Intersect
Classifying Pro-Eating Disorder Images on Twitter Using Deep Learning
Published · Intersect
Op-Eds & Commentary
AI Just Created a Working Virus. The U.S. Isn't Prepared for That.
Published · The Washington Post
The U.S. Cannot Prevent Every AI Biothreat — But It Can Outpace Them
Published · Lawfare